Gut bacteria from amphibians and reptiles achieve tumor elimination in mice
Posted by Xunxi 10 hours ago
Comments
Comment by kinj28 6 hours ago
(Disclaimer- I am an engineer and not a microbiologist/doctor)
Mutations and wrong copying of genome happens all the time in the body and some enzyme has the job of correcting the mutated genes so it doesn’t get into the system. Level 2 defence is T cells killing it as identified as foreign body.
Thing that baffles me is that I see most work happening to eliminate tumor. To me it sounds a tough problem given the permutation and combination of mutation— roughly few trillions.
But I was curious if there is working happening on L1 defence — fixing the enzyme that fixes the wrong copy paste mechanism. Or making the enzyme get more efficient and powerful. Is that line of thought even valid?
Comment by jjk166 2 hours ago
The immune system is pretty good too, which means any given improvement to the replication system is, all else being equal, probably going to prevent mutations the T cells would already handle. If you need to do the research to figure out what's getting past the immune system anyways, and improving the immune system is lower hanging fruit, it's the logical place to start.
Comment by comp_bio 5 hours ago
Comment by ajuc 2 hours ago
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Comment by mfld 2 hours ago
Comment by inglor_cz 21 seconds ago
OTOH our L2 isn't that good, mammals in general (with some notable exceptions such as bats, whales and naked mole rats) are prone to cancer in their older age. There probably is a lot of relatively low-hanging fruit there.
If you think about it - individual cells aren't very precious and if some of them gets FUBARed by something (a virus, radiation or chemical insult), it is better to whack it and reuse the proteins to build a new one, if possible, instead of wasting time and resources on reconstruction of a total wreck.
Which also means that some research into replenishment of stem cells is necessary - and this is, IMHO, the really underfunded part of the whole thing. We lose a lot of stem cells as we age. Maybe we don't have to.
Comment by teekert 2 hours ago
But there is much more to it. This is a nice paper for an overview: Hallmarks of Cancer (tng) [0]. It (among others) adds the very important and for years underestimated role of the immune system to the original 2000 paper.
Comment by allie1 30 minutes ago
Comment by biotechbio 4 hours ago
Most cell types have systems to safely manage replication. Broadly, there are gas pedals (oncogenes) and brakes (tumor suppressors). A classic oncogene is something like RAS, which activates a signaling cascacde and stimulates progression through the cell cycle. A canonical tumor suppressor is something like TP53, the most frequently mutated gene in cancer, which senses various cellular stresses and induces apoptosis or senescence.
Most cancer genomes are more complicated than individual point mutations (SNPs), insertions, or deletions. There are copy number alterations, where you have > or < 2 copies of a genomic region or chromosome, large scale genomic rearrangements, metabolism changes, and extrachromosomal DNA. There is a series on the hallmarks of cancer which is a useful overview [1].
All of the mechanisms that intrinsically regulate cell growth would fall under your "L1 defense". Unfortunately, the idea of reversing somatic point mutations is likely to be a challenging approach to treating cancer given the current state of technology.
First, for the reasons above, cancer is often multifactorial and it would be difficult to identify a single driver that would effectively cure the disease if corrected. Second, we don't have currently delivery or in vivo base editing technology that is sensitive or specific enough to cure cancer by this means. There are gene therapies like zolgensma[2] which act to introduce a working episomal (not replacing the damaged version in the genome) copy of the gene responsible for SMA. There are also in vivo cell therapies like CAR T which attempt to introduce a transgene that encodes for an anti-cancer effector on T cells. These sorts of approaches may give some insight into the current state of art in this field.
Edit: also I should note that the genes involved in DNA repair (PARP, BRACA1/2, MSH2, MLH1, etc) are frequently mutated in cancers and therapeutically relevant. There are drugs that target them, sometimes rather successfully (e.g. PARP inhibitors). But the mechanisms of action for these therapies are more complicated than outright correcting the somatic mutations.
1. https://aacrjournals.org/cancerdiscovery/article/12/1/31/675... 2. https://en.wikipedia.org/wiki/Onasemnogene_abeparvovec
Comment by yes_man 2 hours ago
Also not a doctor or microbiologist, but just wanted to share my layman’s guess on why fixing enzymes will not completely solve the issue: there’s 2 strands of DNA and to fix the broken (mutated) strand you need to have one correct template strand intact so you know what it should be fixed into. It could be the nucleotides swapped places between strands or are deleted completely or otherwise both mutated, which would mean any repair will not revert the sequence to what it used to be.
The other comments so far are probably more informed.
Comment by mechsy 2 hours ago
You’d also have to ‘fix’ DNA: unless we can re-engineer a bunch of key enzymes and then re-encode the entire genome (or maybe key parts) with forward error correction without breaking everything else, it might work. You might also break evolution to some degree by making random point mutations less likely.
But what I learned so far is that as soon as you’d attempt something like this in bacteria, the fitness advantage from an evolutionary standpoint is negligible compared to the efficiency loss introduced by FEC, so your colony would get outcompeted by other bacteria unless there is a niche your resistant bacteria survive in (high radiation environments?). The efficiency loss induced ‘disadvantages’ would probably be less pronounced in mammals though - If (big if) you manage to not also break anything essential in the wonderful yet surprisingly efficient Rube Goldberg machine that is life.
Comment by kinj28 2 hours ago
Thought experiment, again as a layman, was to see if these genes responsible for error correction at the base level can be fixed or bolstered and that will act like a cancer vaccine. But looks like from other comments that this is even more harder!
Comment by kace91 8 hours ago
This sounds like world changing news. Can anyone with domain expertise explain the catch, if any?
Comment by estearum 8 hours ago
Comment by d--b 23 minutes ago
I agree with GP that it is very notable.
I mean if it works on humans, which is not a stretch, colorectal cancer is done. It's huge.
Comment by colordrops 7 hours ago
Comment by 3eb7988a1663 7 hours ago
Existing quality of treatments - if there are already efficacious drugs on the market - how sure are you that this new therapy will be best in class? Only being as good as the status quo is not an ideal competitive position. Conversely, if there is an unmet need because a disease is so lethal/debilitating, regulatory agencies can give latitude in approvals.
Likelihood patient compliance - if it is the most effective drug in the world, but requires intravenous infusion six times a day - nobody is going to adhere to that. GLP drugs are effective, but there is a needle-phobia that is preventing patients getting on board with the idea. Which is why there is an arms race for the first company to develop an oral version.
Toxicity - all chemicals are poisonous. Yet some have a lower therapeutic window than others. If you drug does what it should, but if you take 2x as much and it gives you a heart arrhythmia that is going to be a tough approval for anything but the most deadly conditions.
Comment by z3t4 3 hours ago
Comment by jychang 7 hours ago
Comment by colordrops 3 hours ago
Comment by 3eb7988a1663 2 hours ago
Simplest "bad" reasons are the wealth of the patients. Malaria, river blindness, guinea worm, etc are terrible diseases that mostly impact poor people out of sight from Western eyes. Spending $X billion developing a drug for a population that can barely afford to feed themselves is not going to make a financial return on investment.
Comment by Panzer04 1 hour ago
Comment by estearum 6 hours ago
* Most drug candidates just don't work
* Even among the drug candidates that do, figuring how to safely deliver them to their target is very hard (looks similar to "just doesn't work")
Bad reasons:
* It's too expensive to prove that a drug works
* It's too difficult to differentiate the patients for whom a drug works and the patients for whom it does not
* It is very hard to predict recruitment and to actually recruit patients for clinical trials
* There aren't enough people with the disorder who are also rich enough to afford treatment to justify development
Comment by bawolff 5 hours ago
Comment by hyc_symas 7 hours ago
Other treatments may eventually prove to have too many serious negative side effects. That's a good reason to abandon them.
Comment by Aurornis 6 hours ago
This isn’t really an obstacle, at least not as much as it’s made out to be.
There are numerous examples of drugs being brought to market at high prices despite having been generic compounds. Even old drugs can be brought back at $1000/month or more at different doses or delivery mechanisms.
One example: Doxepin is an old antidepressant that is extremely cheap. It was recently re-certified for sleep at lower doses and reintroduced at low doses at a much higher price, despite being “off patent”.
This happens all the time. The drug companies aren’t actually abandoning usable treatments due to patent issues as much as journalists have claimed. If they couldn’t, for some reason, find a way to charge for it they could still use it as a basis for finding an improved relayed compound with more targeted effects, better pharmacokinetics, etc.
They’re not just dropping promising treatments anywhere if there’s a market for them.
Comment by megaman821 7 hours ago
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Comment by ikawe 7 hours ago
IIRC it was more about production methods than developing new treatments.
Comment by dboreham 7 hours ago
Comment by somedude89897 29 minutes ago
Comment by rwmj 1 hour ago
I wonder if anyone has tried to engineer a mouse that lives forever by applying all these life enhancing mouse therapies at once.
Comment by throw9393848449 10 minutes ago
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Comment by Smileyferret 3 hours ago
Also agree that using a PD-L1 mab feels like it’s for show especially considering the cancer model they’re using (Colon-26) was shown to be substantially less responsive to PD-L1 inhibitors…
Not the world’s best paper imo
Comment by nine_k 3 hours ago
As they say, "the fame of a mathematician is measured by the number of poor papers", because pioneering works are often awkward, treading completely unknown ground. Maybe the same applies to biology sometimes?
Comment by somedude89897 40 minutes ago
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Comment by isolli 2 hours ago
Crocodile blood antibiotics hope
Scientists are catching crocodiles and sampling their blood in the hope of finding powerful new drugs to fight human infections.
Even horrific fighting wounds on the animal heal quickly
Comment by zwnow 2 hours ago
Comment by johnwheeler 4 hours ago
Well, I guess Leukemia has been somewhat cured I heard, so that's pretty huge. When I was a kid it was a death sentence IIRC.
Comment by tombert 4 hours ago
I agree with your overall point though; it's a little annoying that every few weeks we hear about a new experiment that seems to indicate that we'll have a radically new and effective form of treatment for cancer only for it to never materialize.
Comment by bruce511 3 hours ago
"Chemotherapy" again is a loaded term covering a lot of different drugs, drug combinations, protocols and so on. So yeah, a lot of cancer treatment us "chemo" - but today's chemo is far removed from 2000 chemo.
5 year survivability has increased tremendously over the last decades. We're not talking 0.5% here, breast cancer for example has gone from 72% to 93%. Early detection of prostrate cancer has near 100% survivability.
But you're right, improving survivability doesn't make for sexy headlines. Yes there's a social media appetite for "breakthroughs", but the underlying "boring" stuff is doing well, and getting better all the time. It's just not "news".
Comment by stubish 1 hour ago
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Comment by ChrisArchitect 6 hours ago
Comment by inshard 4 hours ago
"Tumor-Specific Accumulation Mechanism
E. americana selectively accumulates in tumor tissues with zero colonization in normal organs. This remarkable tumor specificity arises from multiple synergistic mechanisms:
Hypoxic Environment: The characteristic hypoxia of tumor tissues promotes anaerobic bacterial proliferation
Immunosuppressive Environment: CD47 protein expressed by cancer cells creates local immunosuppression, forming a permissive niche for bacterial survival
Abnormal Vascular Structure: Tumor vessels are leaky, facilitating bacterial extravasation
Metabolic Abnormalities: Tumor-specific metabolites support selective bacterial growth
Excellent Safety Profile
Comprehensive safety evaluation revealed that E. americana demonstrates:
Rapid blood clearance (half-life ~1.2 hours, completely undetectable at 24 hours)
Zero bacterial colonization in normal organs including liver, spleen, lung, kidney, and heart
Only transient mild inflammatory responses, normalizing within 72 hours
No chronic toxicity during 60-day extended observation"
Comment by octaane 5 hours ago
Several things trigger my bullshit meter. Quote:
"This dramatically surpasses the therapeutic efficacy of current standard treatments, including immune checkpoint inhibitors (anti-PD-L1 antibody) and liposomal doxorubicin (chemotherapy agents)"
PD-L1 monoclonal antibodies are only effective against cancers that are, you guessed it, PD-L1 positive. At high percentages, ranging from 1 to 50%. Are these authors even familiar with the state of the art when it comes to cancer medications? Mouse tumors do not equate to people tumors. Many tumor types are not PD-l1 positive.
Doxy is an ancient SOC chemo.
This is a nothing burger.
Give me phase II/III clinical trials, and then let me know what their PFS/OS was after 5 years. and what the medians were at 3- and 5-years. Also, ORR and CR and needed.
CAR-T is ahead of the game, and will be the ultimate winner here as it grows to scale.
Comment by kinj28 5 hours ago
As an engineer I think all drugs tested and efficacies studied are on statistically not so significant data points. Given the permutations and combinations far exceed the clinical trials available and hence everything post clinical trial is also just an extended trial.
Wonder How to fix this? I am assuming heLa cells etc are also not the right test setup to have better test results.
Comment by octaane 5 hours ago
This drug has been used in a huge number of patients for more than 11 years; the next gen of drugs is currently being used. I'm sorry for my curt style of writing, but - people like your father have helped pave the way for that next generation of drugs by constraining clinical trial designs.
Comment by kinj28 5 hours ago
For example - if hela cells can be used for trials — can there be the cultured tissue be used instead of mice as day 1?
Also curious — how did the scientist decide on using a specific cell/protein to be used for checking if this is producing results. Is it a hunch or science ?
Comment by elcritch 4 hours ago
> Many tumor types are not PD-l1 positive. > Doxy is an ancient SOC chemo. This is a nothing burger.
Meh the research didn’t say those were state of the art, but that they were “common” treatments. In other words a baseline for a presumably cheap and well studied animal surrogate.
> CAR-T is ahead of the game, and will be the ultimate winner here as it grows to scale.
Last I read up on it last year CAR-T treatments struggled with solid mass tumors.
Many cancers don’t have unique proteins for CAR-T to target (similar to the pd-l1 issue).
Then CAR-T struggles getting the modified T cells into the solid mass tumors en masse. Interestingly this approach actually makes use of the tumor environment rather than be hindered by it.
Comment by kasperset 8 hours ago
Comment by Aurornis 7 hours ago
Murine studies are a dime a dozen and therefore it’s the default assumption when reading research papers. When human trials commence the fact that it’s in humans is a big part of the research and therefore paper titles.
Comment by tyre 8 hours ago
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Comment by OutOfHere 8 hours ago
Your link is not even about animal studies. It is about a petri dish.
Comment by ath3nd 1 hour ago
Comment by DivingForGold 8 hours ago
Comment by eek2121 7 hours ago
I'm not against AI summaries being on HN, however, users should verify and cite sources so others can verify.
However, I'm just a normal nerd that wants to fact check stuff. Perhaps I'm wrong in wanting to do this. We'll see.
Comment by DivingForGold 6 hours ago
Comment by brailsafe 7 hours ago
I don't see how they contribute anything to a discussion. Even a speculative comment organically produced is more worthwhile than feeding a slop machine back into itself. I don't go out for coffee to discuss LLM summaries with friends, and I can't imagine why anyone would want to do that here.
Earlier today I asked Gemini Pro to find information on a person's death that was turning up nothing for me otherwise, and it just imagined finding verbatim Obituary quotes in every source, cobbled together vaguely related names, plausible bits and pieces from wherever, almost like it was 2023 again.
It ain't search, and it ain't worthwhile; I'd much rather someone ask an llm the question and then post a question out of curiosity based on it, but without the summary itself
Comment by xupybd 7 hours ago
It does well at filtering information for you.
Going to primary sources is required to verify what it says but it can reduce the leg work rather a lot.
Comment by duskdozer 4 hours ago
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Comment by roarcher 6 hours ago
Unfortunately it can hallucinate those too. I've had ChatGPT cite countless nonexistent academic papers, complete with links that go nowhere.
Comment by tharkun__ 6 hours ago
But we still need to ask it for and then follow file and line number references (aka "links") and verify it's true and it got the references right and build enough of a mental model ourselves. With code (at least for our code base) it usually does get that right (the references) and I can verify. I might be biased because I both know our code base very well already (but not everything in detail) and I'm a very suspicious person, questioning everything. With humans it sometimes "drives them crazy" but the LLM doesn't mind when I call its BS over and over. I'm always "right" :P
The problem is when you just trust anything it says. I think we need to treat it like a super junior that's trained to very convincingly BS you if it's out of its depth. But it's still great to have said junior do your bidding while you do other things and faster than an actual junior and this junior is available 24/7 (barring any outages ;)).
Comment by justinc8687 5 hours ago
Comment by cyberax 7 hours ago
Unlikely. The leading hypothesis is that mitochondria are a part of the apoptosis cycle, so cells need to disable them to become cancerous. This is called the Warburg effect.
There are several drugs that target this mechanism, inhibiting the anaerobic metabolism. They are effective initially, but cancers always find ways to work around them.
Comment by MangoToupe 8 hours ago
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Comment by Terr_ 6 hours ago
"This news article links human survival to something taken from amphibians and reptiles. There are conspiracy-theorists who posit the existence of Lizard people. It would be amusing if those humans discovered this news, and claimed it was a plot by Lizard People to make us dependent on them."
So there, I think I explained the joke... which isn't necessarily a good thing. In the words of E.B. White:
> Explaining a joke is like dissecting a frog. You understand it better but the frog dies in the process.
Now, I could work that new amphibian-connection into another joke... But let's face it, it would be "too meta" at this point.
Comment by tombert 4 hours ago
Comment by dylan604 3 hours ago